So, here is a very bizarre bug ... I did a "select * from <named_graph=urn:ontology> where {?s ?p ?o}" and returned sparql-json.
When working through the binding sets, I got ...
{'p': {'type': 'uri', 'value': 'urn:myontology:label'}, 's': {'type': 'uri', 'value': 'urn:myontology:SpecificClassName'}, 'o': {'type': 'literal', 'value': 'Specific Label for the Class'}}
{'p': {'type': 'uri', 'value': 'urn:myontology:label'}, 's': {'type': 'uri', 'value': 'urn:myontology:SpecificClassName'}, 'o': {'type': 'literal', 'value': 'Specific Label for the Class'}}
{'p': {'type': 'uri', 'value': 'urn:myontology:specificProperty'}, 's': {'type': 'statement', 's': {'type': 'uri', 'value': 'urn:myontology:SpecificClassName'}, 'p': {'type': 'uri', 'value': 'urn:myontology:indicatedBy'}, 'o': {'type': 'uri', 'value': 'urn:myontology:AnotherSpecificClassName'}, 'g': {'type': 'uri', 'value': 'urn:ontology'}}, 'o': {'type': 'literal', 'value': ':startTime'}}
Note the repeating binding sets and then getting back a binding set with variables, p, s, s, p, o, g, o. The "g" is indeed the graph name.
I can send the ontology that was queried (but can't post it). The problem does not happen in Stardog Studio (or if it does, I don't see it).
Andrea